Nucleus-independent Chemical Shift Research Articles

Computational study on reactivity, aromaticity, and absorption spectra of chrysene: effect of BN doping and substituents

Abstract Density functional study (DFT) is performed for understanding the reactivity, aromaticity, and UV-visible absorption spectra of chrysene-based materials. Effect of BN doping on the said parameters are analyzed along with the effect of –Me (methyl), –OH (hydroxyl), –CHO (formyl) –COOH (carboxyl) and –CN (cyano) substituents. Global reactivity parameters viz. energy of HOMO (E HOMO), global hardness (η), chemical potential (μ) and electrophilicity (ω) are computed. Nucleus independent chemical shifts (NICS) values are estimated to study the variation in aromaticity. Time dependent density functional theory (TD-DFT) is used to study the UV–Visible absorption spectra. Effects of BN doping and substituents on corresponding dipole moments and band gaps are also analyzed. Presence of BN unit and/or substituents induced considerable impact on global reactivity, dipole moment, band gap and aromaticity of the chosen systems, especially for BN doped chrysene at the edge. Absorption spectra which are red shifted in presence of BN and substituents are mostly found within the UV-region.

Comparative study of 4-((4-aminophenyl)diazenyl)-2-((2-phenylhydrazono)methyl)phenol and N-(4-((4-hydroxy-3-((2-phenylhydrazono)methyl)phenyl)diazenyl)phenyl)acetamide - DFT method

Theoretical calculation of 4-((4-aminophenyl)diazenyl)-2-((2-phenylhydrazono)methyl) phenol (1) and N-(4-((4-hydroxy-3-((2-phenylhydrazono)methyl)phenyl)diazenyl)phenyl) acetamide (2) was studied by DFT/B3LYP/6-311+G(d,p) basis set. The calculated values of geometric structural parameters, Fourier transform infrared spectral data, highest occupied molecular orbital and lowest unoccupied molecular orbital, natural bond orbital, nucleus-independent chemical shifts, Fukui function, polarizability, hyperpolarizability, and UV data of compounds 1 and 2 clearly indicate that substitution of the amino group alters the physical properties of compound 2. The nucleus-independent chemical shift values of the amino-substituted phenyl ring reduces the aromatic character due to the lone pair electron on nitrogen involved in inductive and conjunction effects, as well as due to OH, NH2 and OH, NHCOCH3 in compounds 1 and 2, respectively. The effect of the solvent on different parameters was studied, and it was found that increasing the dielectric constant increased the parameter studied. The stability and planarity of the molecule’s effects on dipole moment, energy, polarizability, and hyperpolarizability were studied extensively.

Effect of Benzo-Annelation on Triplet State Energies in Polycyclic Conjugated Hydrocarbons.

In a series of earlier studies, the effect of benzo-annelation was found to be a useful tool for tuning the aromaticity in polycyclic conjugated compounds to desired level. In this work we studied the (anti)aromaticity of benzo-annelated derivatives of three conjugated hydrocarbons (anthracene, fluoranthene and biphenylene) in their lowest lying singlet (S0) and triplet (T1) states by means of the energy effect (ef), harmonic oscillator model of aromaticity (HOMA), multicentre delocalization indices (MCI), magnetically induced current densities (MICDs) and nucleus independent chemical shifts (NICS). We showed that benzo-annelation is a topology-based effect which can be used to modify the T1 state excitation energies (E(T1)). A quantitative model was established being able to accurately predict the E(T1) based only on the numbers of angularly, linearly and geminally annelated benzene rings. In addition, it was demonstrated that the E(T1) can be directly related to the (anti)aromatic character of the central ring in the studied molecules in their S0 state.

A theoretical study on 1H-indole-2,3-dione complexes with lithium, sodium, and potassium cations.

A comparative study of the change in different properties of electronic and structural of the free 1H-indole-2,3-dione molecule and its complexes has been obtained. HOMA analysis was performed to investigate the effects of lithium sodium and potassium cations on the aromaticity of lithium sodium and potassium complexes of 1H-indole-2,3-dione. Several 1H-indole-2,3-dione complexes with lithium, sodium, and potassium cations were optimized at the B3LYP/6-311G(d,p) level. The cation and π interaction has been investigated from different aspects, including interaction energy calculations, charge transfer values, and changes in the aromaticity of the ring upon complexation. The charge transfer and natural population analysis for the complexes were performed with the natural bond orbital (NBO) analysis. The properties of bond critical points in complexes were studied by applying the quantum theory of atoms in molecules (QTAIM). Finally, the aromaticity change of phenyl induced upon complex formation was evaluated by applying the harmonic oscillator model of aromaticity (HOMA). [Li-INa]+ and [[Li-INb]+ were optimized with the wB97XD function using a version of Grimme's D2 dispersion model, and the absorption energy was compared with the calculation made with the B3LYP functional.

Advances for Triangular and Sandwich-Shaped All-Metal Aromatics.

Much experimental work has been contributed to all-metal σ, π and δ-aromaticity among transition metals, semimetallics and other metals in the past two decades. Before our focused investigations on the properties of triangular and sandwich-shaped all-metal aromatics, A. I. Boldyrev presented general discussions on the concepts of all-metal σ-aromaticity and σ-antiaromaticity for metallo-clusters. Schleyer illustrated that Nucleus-Independent Chemical Shifts (NICS) were among the most authoritative criteria for aromaticity. Ugalde discussed the earlier developments of all-metal aromatic compounds with all possible shapes. Besides the theoretical predictions, many stable all-metal aromatic trinuclear clusters have been isolated as the metallic analogues of either the σ-aromatic molecule's [H3]+ ion or the π-aromatic molecule's [C3H3]+ ion. Different from Hoffman's opinion on all-metal aromaticity, triangular all-metal aromatics were found to hold great potential in applications in coordination chemistry, catalysis, and material science. Triangular all-metal aromatics, which were theoretically proved to conform to the Hückel (4n + 2) rule and possess the smallest aromatic ring, could also play roles as stable ligands during the formation of all-metal sandwiches. The triangular and sandwich-shaped all-metal aromatics have not yet been specifically summarized despite their diversity of existence, puissant developments and various interesting applications. These findings are different from the public opinion that all-metal aromatics would be limited to further applications due to their overstated difficulties in synthesis and uncertain stabilities. Our review will specifically focus on the summarization of theoretical predictions, feasible syntheses and isolations, and multiple applications of triangular and sandwich shaped all-metal aromatics. The appropriateness and necessities of this review will emphasize and disseminate their importance and applications forcefully and in a timely manner.

A systematic study on interplay between intermolecular hydrogen bonding and aromaticity

In this study, the interplay between aromaticity and intermolecular hydrogen bonding was investigated in some heterocyclic compounds using quantum mechanical calculations. The NH … O intermolecular hydrogen bonds between formamide and NH and CO functional groups of the selected compounds enhance the delocalisation of the six-membered ring electron cloud, resulting in an increase in the aromaticity of the ring. The contribution of various factors to the binding energy, including the stabilisation energy of the interplay between aromaticity and H-bonding, was estimated using two model systems. The relative binding energies and the estimated stabilisation energies of the aforementioned interplay can be explained by the weights of resonance structures calculated using the natural resonance theory (NRT) analysis with the natural bond orbitals (NBO) method. These weights reflect the tendency of ring nitrogen lone pairs to contribute to the π electron cloud of the ring. The results of the topological analysis of electron charge densities using the atoms in molecules (AIM) method were used to estimate the aromaticity of the ring. Aromaticity indices, particularly nucleus-independent chemical shifts (NICS) calculated one angstrom above the ring plane, are in good linear correlation with the estimated stabilisation energies and electron density at the H-bond critical points. The sum of the total nuclear spin–spin coupling 1J of adjacent atoms of the ring (Σ1J), and the J values of H-bond donor and H-bond acceptor atoms, 1HJNO, which are in good agreement with the energy data and aromaticity indices, can be used as measures of the interplay between aromaticity and H-bonding. The interplay between H-bonding and the aromaticity of the ring is clearly evident from the changes in the pattern of the molecular electrostatic potential (MEP) contour maps at 1.7 Å above the plane of the molecule upon H-bond complexation.

1,2,3,4-Tetrafluorobiphenylene: A Prototype Janus-Headed Scaffold for Ambipolar Materials.

The title compound was synthesized by Ullmann cross-coupling in low yield as the first representative of [n]phenylene containing hydrocarbon and fluorocarbon rings. Stille/Suzuki-Miyaura cross-coupling reactions, as well as substitution of fluorine in suitable starting compounds, failed to give the same product. The geometric and electronic structures of the title compound were studied by X-ray diffraction, cyclic voltammetry and density functional theory calculations, together with Hirshfeld surface and reduced density gradient analyses. The crystal structure features head-to-tail π-stacking and other fluorine-related secondary bonding interactions. From the nucleus-independent chemical shifts descriptor, the four-membered ring of the title compound is antiaromatic, and the six-membered rings are aromatic. The Janus molecule is highly polarized; and the six-membered fluoro- and hydrocarbon rings are Lewis π-acidic and π-basic, respectively. The electrochemically-generated radical cation of the title compound is long-lived as characterized by electron paramagnetic resonance, whereas the radical anion is unstable in solution. The title compound reveals electrical properties of an insulator. On expanding its molecular scaffold towards partially fluorinated [n]phenylenes (n≥2), the properties presumably can be transformed into those of semiconductors. In this context, the title compound is suggested as a prototype scaffold for ambipolar materials for organic electronics and spintronics.

Dihydrophenanthrene Open-Shell Singlet Diradicals and Their Roles in the Mallory Photocyclization Reaction.

A computational study (ωB97X-D/6-31G(d)) of the Mallory photocyclization reaction has revealed that the well-established dihydrophenanthrene (DHP) intermediates can adopt either closed-shell (CS) or open-shell-diradical (OS) singlet ground states. A detailed study of the properties of DHPs allowed their classifications as OS, borderline-OS, borderline-CS, or CS intermediates. The triplet electronic state and higher energy CS* isomer of all the OS singlet diradicals were computationally located, and the expected relationship between the diradical index, yo, and the triplet energy and the OS-CS* energy gaps was established. The importance of aromaticity in stabilizing the OS singlet diradicals was confirmed by using the Harmonic Oscillator Model of Aromaticity (HOMA). The thermal decompositions of DHPs by cycloreversions to regenerate the Mallory starting materials were also studied. The cycloreversion mechanism was described as a homolytic cleavage characterized by an anchimeric assistance continuum promoted by bis-β-homolytic cleavage.

Partial restoration of aromaticity of pentacene-5,7,12,14-tetrone on Cu(111).

The π-conjugation of organic molecules can be strongly influenced when functional groups are added to a molecule, for example when pentacene is converted into pentacene-5,7,12,14-tetrone (P4O) by substitution of four H-atoms with four O-atoms, leading to four CO double bonds. In fact, although free P4O resembles the parent hydrocarbon pentacene structurally at a first glance, its electronic properties differ drastically and can be more accurately described by three benzene units connected via four carbonyl groups. If P4O is deposited onto Cu(111), the electronic interaction across the interface has previously been reported to fully restore the π-conjugation through a weakening of the CO double bonds and a redistribution of electrons, both of which have been explained with the model of surface-induced aromatic stabilization. Here, we observe for the case of P4O on Cu(111) that the molecule does not exhibit full π-conjugation upon interaction with the surface, likely because of the special electronic nature of the hybridized P4O on Cu(111). Our results are derived from CO-functionalized noncontact atomic force microscopy measurements in combination with dispersion-corrected density functional theory calculations yielding bond lengths and molecular geometries. To characterize the aromaticity, we apply the harmonic oscillator model of aromaticity.

Identification and quantification of local antiaromaticity in polycyclic aromatic hydrocarbons (PAHs) based on the magnetic criterion.

The spatial magnetic properties, through-space NMR shieldings (TSNMRSs, actually the ring current effect in 1H NMR spectroscopy), of a selection of entirely antiaromatic and aromatic polycyclic conjugated hydrocarbons (PCHs), and aromatic PCHs with antiaromatic components, have been calculated using the GIAO perturbation method employing the nucleus independent chemical shift (NICS) concept and visualized as iso-chemical-shielding surfaces (ICSSs) of various sizes and directions. Using both in-plane and above/below-plane ICSS data, polycyclic aromatic hydrocarbons can be readily distinguished from polycyclic antiaromatic ones, even when antiaromatic components are present in the polycyclic aromatic hydrocarbons (PAHs). These antiaromatic zones can also be attributed to internal components of the in-plane deshielding belt present in aromatic compounds and possible partial antiaromatic ring current effects in the same place. This makes it possible to unequivocally confirm correctly assigned or adjust incorrectly assigned antiaromaticity of individual rings in the same molecule.

Global minimum and a heap of low-lying isomers with planar tetracoordinate carbon in the CAl3MgH2- system.

A global minimum and a heap of low-lying isomers with planar tetracoordinate carbon (ptC) are identified in the CAl3MgH2- system by computational quantum chemical investigations. The nature of the chemical bonding in the global minimum ptC isomer is examined using the conceptual quantum chemical tools. The atoms in molecule (AIM) analysis reveals that the global minimum isomer possesses a ptC geometry. Additionally, the adaptive natural density partitioning (AdNDP), electron localization function (ELF), and nucleus-independent chemical shifts (NICS) analysis corroborate the presence of delocalization in the ptC isomer. The delocalization of electron density in the global minimum ptC isomer contributes to attaining structural stability. The results also suggest that the bridging hydrogen plays a crucial role in stabilizing the ptC system. Furthermore, the ab initio molecular dynamics study supports the structural stability of the ptC isomer.

Carbones - A Classification on the Magnetic Criterion.

Carbones (carbodiphosphoranes, bent allenes and chalcogen-stabilized carbones) bear the same resonance contributor X+ -C2- -Y+ (X+ , Y+ =PR3 + , CR2 + , SR2 + , SeR2 + , S+ R2 =NR) and exhibit unique bonding and donating properties at the central carbon atom. A classification is given on basis of both the geometry and the magnetic properties (13 C chemical shift of the central carbon atom and the spatial magnetic properties, through-space NMR shieldings (TS NMRSs), actually the anisotropy effect or the ring current effect of aromatic species). TS NMRS values have been calculated using the GIAO perturbation method employing the nucleus independent chemical shift (NICS) concept and the results visualized as iso-chemical-shielding surfaces (ICSS) of various size and direction. The synergy of geometry (linear or bent, orthogonal or twisted structures) and NMR characteristics (extend of the high field shift of the central carbon atom, anisotropy effect of the allene-like C=C double bonds or the ball-like anisotropy effect of carbone-like central carbon atom) provides a comprehensive picture of the dominating resonance contributor.

Linear Extension of Carbaporphyrin Chromophores: Synthesis, Protonation, and Metalation of Anthro[2,3-b]carbaporphyrins: Evidence for 30π-Electron Aromatic Circuits in a Palladium(II) Complex.

Acid-catalyzed condensation of a naphtho[2,3-f]indane dialdehyde with a tripyrrane, followed by an oxidation step, afforded an anthro[2,3-b]-21-carbaporphyrin. The presence of a fused anthracene unit induced minor bathochromic shifts and did not significantly affect the aromatic characteristics of the carbaporphyrin core. Protonation led to the formation of a monocation with similar diatropic properties, but the dication generated in the presence of a large excess of trifluoroacetic acid had a weakened Soret band absorption and a broad absorption at 754 nm. Nucleus-independent chemical shift (NICS) calculations indicate that the dication is only weakly aromatic and possesses a 32-atom 30π electron delocalization pathway. Alkylation with methyl iodide and potassium carbonate gave a 22-methyl derivative that reacted with palladium(II) acetate to afford an aromatic palladium(II) complex. Upon heating, the methyl group migrated from the nitrogen to the internal carbon atom and the resulting complex exhibited diminished aromatic character. A comparison with related carbaporphyrin complexes without ring fusion or with benzo- or naphtho-fused units demonstrated that the diatropic character decreased with increasing conjugation. NICS calculations and anisotropy of induced current density (AICD) plots confirmed this trend and showed that the remaining aromatic properties of the anthrocarbaporphyrin complex were due to a 30π electron circuit that extends around the entire anthracene unit.

Novel cage-like all-nitrogen molecular crystal stable under ambient conditions

Exploring whether cage-like molecular crystals similar to those in carbon systems exist in all-nitrogen systems is not only of great theoretical significance, but also of great practical application value as high-energy-density materials. Here, we predict a new type of cage-like all-nitrogen Td-N4 molecular crystal by using the CALYPSO method. The structure has mechanical and dynamic stability under ambient pressure. Moreover, Td-N4 molecular crystal has excellent thermal stability and can be stabilized to a high temperature of 2400 K. The reason why Td-N4 molecular crystal has such excellent stability is due to the high decomposition energy barrier (251.5 kJ/mol), and the most essential reason may be due to the strong double spherically aromatic of the molecule with the nucleus-independent chemical shift (NICS) of −70.5 ppm. It is worth noting that the energy density of the Td-N4 molecular crystal is 11.89 kJ/g, which is three times that of the TNT (4.3 kJ/g), twice that of HMX (5.7 kJ/g), and higher than that of the well-known cg-N structure (9.7 kJ/g). In addition, Td-N4 molecular crystal also has excellent properties with high Heat of detonation, detonation pressure and detonation velocity. The prediction of Td-N4 molecular crystal provides a very promising candidate for high energy density materials.

Extended Tetrathiafulvalenes with Fluoreno[3,2-b]fluorene and Diindeno[1,2-b : 1',2'-i]anthracene Cores.

In one-dimensional polycyclic aromatic hydrocarbons (PAHs) containing five- and six-membered rings fused together, one key question is whether the structures possess a quinoidal or aromatic diradical character. Here, we generate such PAHs by reversible oxidation of PAH-extended tetrathiafulvalenes (TTFs). Extended TTFs were thus prepared and studied for their geometrical properties (crystallography), redox properties, and UV/Vis/NIR/EPR characteristics as a function of charge state. The EPR measurements of radical cations showed unique features for each PAH-TTF. The dications, formally composed of fluoreno[3,2-b]fluorene and diindeno[1,2-b:1',2'-i]anthracene cores, were experimentally found to exhibit singlet ground states. For the latter, calculations reveal the closed shell, quinoid singlet state to be isoenergetic with the open shell singlet diradical. Each charge state exhibited unique optical properties with radical cations absorbing strongly in the NIR region with signatures from π-dimers for the large core. The experimental results were paralleled and supported by detailed computations, including spin density distribution calculations, EPR simulations, and nucleus independent chemical shift (NICS) xy scans.

Unlocking Heteroaromatic Ring Systems through Chalcogen Insertion into Boroles.

In this work, we report the reactivity of various annulated borole derivatives toward chalcogen (O, S, and Se) insertion. Among a series of 9-borafluorenes with different boron substituents (Ph, Br, or o-carboranyl) and a mixed thiophene-benzene-fused derivative, only the 9-o-carboranyl-substituted 9-borafluorene yielded the complete set of chalcogen-containing heteroarenes, including the first 1,2-selenaborinine derivative. To evaluate the aromaticity of this heterocyclic analogue of phenanthrene, nucleus-independent chemical shift (NICS) values were computed and compared to those of its lighter group 16 congeners.

Glutathione Peroxidase-like Antioxidant Activity of 1,3-Benzoselenazoles: Synthesis and In Silico Molecular Docking Studies as Pancreatic Lipase Inhibitors.

The synthesis of 1,3-benzoselenazoles was achieved by the reaction of corresponding bis[3-amino-N-(p-tolyl)benzamide-2-yl] diselenide, bis[3-amino-N-(4-methoxyphenyl)benzamide-2-yl] diselenide, and bis[3-amino-N-(4-(dimethylamino)phenyl) benzamide-2-yl] diselenide with aryl aldehydes. The 1,3-benzoselenazoles continued to exist as planar molecules due to the presence of secondary Se···O interactions as revealed by the single-crystal X-ray analysis. The presence of secondary Se···O interactions in 1,3-benzoselenazoles was confirmed using natural bond orbital (NBO) and atoms in molecules (AIM) calculations. Nucleus-independent chemical shift (NICS) values suggested the presence of aromatic character in a five-membered benzoselenazole heterocyclic ring. The glutathione peroxidase (GPx)-like antioxidant activity of all 1,3-benzoselenazoles was assessed using a thiophenol assay, exhibiting greater antioxidant activity than Ph2Se2 used as a reference. The most active catalyst carrying a strong electron-donating group (-NMe2) at the ortho-position to the benzoselenazole ring was further investigated at different concentrations of thiophenol, H2O2, and 1,3-benzoselenazoles as catalyst for determining their catalytic parameters. Moreover, the potential applications of all 1,3-benzoselenazoles against pancreatic lipase (PL) have been identified using in silico interactions between the active sites of the 1LPB protein as evaluated using a molecular docking study.

Exact two-component theory becoming an efficient tool for NMR shieldings and shifts with spin–orbit coupling

We present a gauge-origin invariant exact two-component (X2C) approach within a modern density functional framework, supporting meta-generalized gradient approximations such as TPSS and range-separated hybrid functionals such as CAM-B3LYP. The complete exchange-correlation kernel is applied, including the direct contribution of the field-dependent basis functions and the reorthonormalization contribution from the perturbed overlap matrix. Additionally, the finite nucleus model is available for the electron-nucleus potential and the vector potential throughout. Efficiency is ensured by the diagonal local approximation to the unitary decoupling transformation in X2C as well as the (multipole-accelerated) resolution of the identity approximation for the Coulomb term (MARI-J, RI-J) and the seminumerical exchange approximation. Errors introduced by these approximations are assessed and found to be clearly negligible. The applicability of our implementation to large-scale calculations is demonstrated for a tin pincer-type system as well as low-valent tin and lead complexes. Here, the calculation of the Sn nuclear magnetic resonance shifts for the pincer-type ligand with about 2400 basis functions requires less than 1 h for hybrid density functionals. Further, the impact of spin–orbit coupling on the nucleus-independent chemical shifts and the corresponding ring currents of all-metal aromatic systems is studied.

28π Non‐Fused Hexaphyrin: Synthesis, Protonation Triggered Möbius Aromaticity and Structural Properties

AbstractSynthesis of core‐modified 28π non‐fused hexaphyrin is reported. The optical and 1H NMR spectral analysis reveals the non‐aromatic nature of the macrocycle in its freebase form at 298 K. However, the non‐aromatic nature of the macrocycle remains unaltered upon lowering the temperature. The structural elucidations for the freebase macrocycle also justify the non‐aromaticity of the freebase 8, where the thiophene units of the 1,2 diphenyl 1,2 dithienyl ethene moiety is deviated maximum from the overall macrocyclic framework. Protonation on the imino pyrrolic nitrogens results in single–crystal X‐ray structures of 8 which show essential distortion in macrocyclic framework needed for the effective π‐electron delocalization, attaining Möbius aromaticity. The Nucleus Independent Chemical Shift (NICS) values for the freebase and protonated macrocycles are −2.0 ppm and −5.6 ppm. The Anisotropy Induced Current density shows the clockwise delocalization of current density vectors. Overall, the spectral, structural and theoretical analysis suggests nonaromatic in freebase and Möbius aromatic nature of the protonated hexaphyrin.

Bismuth Infrared Star: being at a glance.

Bismuth polycations have garnered significant attention from researchers due to their extraordinary and counter-intuitive structures and stoichiometries. Despite extensive experimental and theoretical investigations, our understanding of the bonding in such clusters remains insufficient. In this study, we conducted an AdNDP bonding analysis to elucidate the bonding characteristics using both homoatomic and heteroatomic bismuth clusters with various stoichiometries. By analyzing the calculated nucleus-independent chemical shift data, we confirmed the aromatic nature of these species. We identified some universal bonding patterns that can be applied to a range of homoatomic and heteroatomic bismuth clusters. Additionally, we performed calculations of absorbance and fluorescence spectra to gain insights into the near-infrared emission and establish a potential correlation between absorbance and the identified bonding patterns.